rs679742 chr1:37690518 C>G
- Sequence
gggactgcaccacgcgcccacagt[C/G]tctctgcgcatgctcacacgcgac
- ASB in cell types
- adult erythroblasts GM12891 (male B- cells lymphoblastoid cell line) HUVEC-C (HUVEC, umbilical vein endothelial cells) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- STAG1_HUMAN HCFC1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.05 | 0.47 | 1.00 | n/a | n/a | |||
| HCFC1_HUMAN | 0.83 | -0.04 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid