rs680033 chr21:39537589 C>T

Sequence
acagattaacaagagaaagacaaa[C/T]ggaagtttattaacatgcatgcct
ASB in cell types
WA09 (embryonic stem cells)
ASB for transcription factors
NANOG_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NANOG_HUMAN 2.03 -0.42 1.5·10-41.00 1.33 0.09 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

NANOG_HUMAN Weak Discordant
NANOG_HUMAN pic

Genetic associations

GRASP refractive error,  rheumatoid arthritis,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

Download