rs680273 chr11:64772163 G>C

Sequence
ttcacctccaacaggcatcggcta[G/C]atcaactaaattctaatcccagtt
ASB in cell types
22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN -1.47 2.33 1.000.02 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  hdl cholesterol,  height,  platelet count,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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