rs680823 chr1:110306105 C>G

Sequence
agcccttcctcctttctttctctg[C/G]gctcctcctcctcacatgcctggg
ASB in cell types
monocyte-derived dendritic cells macrophages form periferal blood
ASB for transcription factors
SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 0.48 2.05 1.003.3·10-5 1.88 -0.03 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

SPI1_HUMAN Weak Discordant
SPI1_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  serum creatinine,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

Download