rs681673 chr1:67686705 T>C

Sequence
gggtcaggagggtggctgcctttg[T/C]ccgactagagtgtggctggacttt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ATF3_HUMAN CEBPB_HUMAN AGO2_HUMAN MNT_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN n/a 1.05 1.006.4·10-4 2.00 n/a No Hit
CEBPB_HUMAN -0.10 1.84 1.002.3·10-3 2.38 n/a No Hit
AGO2_HUMAN 1.56 -1.30 0.011.00 1.17 n/a n/a
MNT_HUMAN 0.17 1.35 1.000.03 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  advanced age-related macular degeneration,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd

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