rs683996 chr11:64107471 C>T

Sequence
cattctctgaagttcaggacatcc[C/T]gccgcctggcaccagcgccaccca
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.12 1.28 1.000.04 1.00 -0.80 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GRASP birth weight,  irritible bowel syndrome,  serum creatinine
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

Download