rs684232 chr17:715725 T>C
- Sequence
ggagacgtttactgaggttgaata[T/C]ccgggatctaagtcctgaatagtc
- ASB in cell types
- HEK293 (embryonic kidney) renal cortex 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.41 | -3.63 | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.29 | 0.68 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, height, parkinsons disease, prostate cancer, refractive error
GTEx eQTL Adipose_Visceral_Omentum, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Whole_Blood