rs684559 chr1:111215824 G>A

Sequence
tcactagtgtccttgcaactgaca[G/A]gaagcagaatatagtggtaatcag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
FOXK2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 2.27 -1.79 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  fasting insulin,  homa-b,  neuroblastoma (brain cancer),  neuroticism,  partial epilepsy
GTEx eQTL Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Liver,  Lung,  Spleen,  Thyroid,  Whole_Blood

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