rs687339 chr3:136213517 C>T

Sequence
gtgcaaatatttagacatatggta[C/T]gtaggtcaccatttgtacttatgc
ASB in cell types
liver
ASB for transcription factors
HNF4A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HNF4A_HUMAN 2.23 -4.01 6.5·10-31.00 1.50 -2.01 Concordant
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Motif analysis

HNF4A_HUMAN Concordant
HNF4A_HUMAN pic

Genetic associations

EMBL-EBI c-reactive protein levels,  triglyceride levels
GRASP asthma,  birth weight,  coronary artery disease (cad),  hdl cholesterol,  ldl cholesterol,  plasma fibrinogen,  triglycerides
Finemapping triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid

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