rs687797 chr20:833725 C>G
- Sequence
ggggcggcgtgctcacttcccctt[C/G]cacggcgccccagggactttccct
- ASB in cell types
- breast tumor HUVEC-C (HUVEC, umbilical vein endothelial cells) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) monocyte-derived dendritic cells
- ASB for transcription factors
- CDN1B_HUMAN TF65_HUMAN ANDR_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | 0.13 | 1.15 | 1.62 | n/a | n/a | |||
| TF65_HUMAN | 1.76 | n/a | 4.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.53 | -0.20 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.04 | 0.28 | 1.59 | -2.26 | Concordant | |||
| ESR1_HUMAN | 3.03 | 0.75 | 1.83 | n/a | No Hit |
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Motif analysis
