rs688728 chr6:157756867 G>A
- Sequence
ctgggcatctcagcaacaaagcag[G/A]ctgtgccaacctgcggccgagggc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) foreskin keratinocyte RH4 (alveolar rhabdomyosarcoma) adult erythroblasts
- ASB for transcription factors
- CTCF_HUMAN KDM6A_HUMAN SMCA5_HUMAN TRI22_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.27 | 1.15 | 1.45 | 0.39 | Weak Concordant | |||
| KDM6A_HUMAN | n/a | 2.72 | 2.00 | n/a | n/a | |||
| SMCA5_HUMAN | -2.17 | 2.55 | 1.00 | n/a | n/a | |||
| TRI22_HUMAN | -1.04 | 2.18 | 1.00 | n/a | n/a |
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Motif analysis
