rs689211 chr10:68047843 C>A

Sequence
tggcagattcttacaaaagtaaat[C/A]tactcttaccatatgacccaattc
ASB in cell types
LNCaP (prostate carcinoma) breast tumor PANC1 (pancreatic ductal adenocarcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.10 2.31 1.009.3·10-35 1.79 5.05 Concordant
ANDR_HUMAN 0.18 1.87 1.003.2·10-15 1.49 n/a No Hit
FOXA2_HUMAN -0.81 2.36 1.001.0·10-3 1.00 5.57 Concordant
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Motif analysis

FOXA2_HUMAN Concordant
FOXA2_HUMAN pic

Genetic associations

GTEx eQTL Adrenal_Gland,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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