rs689384 chr18:56651223 T>C
- Sequence
gcccacagctggccttttctccac[T/C]ttcggtctccatcgtaacgcggct
- ASB in cell types
- breast tumor 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma)
- ASB for transcription factors
- ESR1_HUMAN ANDR_HUMAN HCFC1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.43 | n/a | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 2.92 | -5.13 | 2.00 | n/a | No Hit | |||
| HCFC1_HUMAN | 1.10 | n/a | 2.50 | n/a | n/a | |||
| FOXK2_HUMAN | 1.97 | -1.66 | 1.00 | n/a | No Hit | |||
| ZN143_HUMAN | 1.15 | -0.60 | 1.11 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Thyroid