rs6902334 chr6:87731945 T>C
- Sequence
tagagagaggtgagcagccaatgt[T/C]acagtaggaacaatacttcctgta
- ASB in cell types
- CD14+ monocytes MDM(monocyte derived macrophages) KG1 (acute myeloid leukemia) breast tumor
- ASB for transcription factors
- SPI1_HUMAN STAT1_HUMAN ESR1_HUMAN ZBT16_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | -0.15 | 2.18 | 1.41 | n/a | No Hit | |||
| STAT1_HUMAN | n/a | 4.36 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | n/a | 3.56 | 2.00 | 3.93 | Concordant | |||
| ZBT16_HUMAN | 2.98 | n/a | 1.00 | -4.91 | Concordant |
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Motif analysis
Genetic associations
GRASP autism with low iq, fasting blood glucose, hdl cholesterol, obesity with early age of onset (age >2), waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood