rs690528 chr9:95876006 A>G
- Sequence
cctccgccgccttccgggtgttac[A/G]tgcagccgggctcggcccctcccc
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) CAR-T cells foreskin keratinocyte WA01 (H1, human embryonic stem cells)
- ASB for transcription factors
- BRD2_HUMAN GABPA_HUMAN CTCF_HUMAN IRF4_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | 1.70 | -0.07 | 1.94 | n/a | n/a | |||
| GABPA_HUMAN | 1.97 | -0.82 | 1.92 | n/a | No Hit | |||
| CTCF_HUMAN | 1.19 | 0.43 | 1.26 | n/a | No Hit | |||
| IRF4_HUMAN | 1.91 | -0.54 | 1.00 | n/a | No Hit | |||
| BC11B_HUMAN | 1.64 | 0.18 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood