rs690592 chr5:154049899 T>C
- Sequence
agcaagttcccactcggatgatga[T/C]gtcatcatagccaaagagggaact
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ATF2_HUMAN ATF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | 1.79 | -2.33 | 1.33 | 6.09 | Discordant | |||
| ATF7_HUMAN | 1.60 | -1.74 | 1.50 | 2.32 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Heart_Atrial_Appendage, Muscle_Skeletal, Testis, Whole_Blood