rs690600 chr15:53717142 C>T
- Sequence
aagaggctacatttggtctatcat[C/T]gataacagtttatctctgcttctc
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.03 | 0.59 | 1.23 | n/a | No Hit | |||
| SMC3_HUMAN | 0.34 | 1.32 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.34 | 1.37 | 1.10 | n/a | n/a | |||
| STAG1_HUMAN | 1.44 | 0.13 | 1.08 | n/a | n/a |
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