rs6957684 chr7:47669618 T>C
- Sequence
ggcttcatgtggcattgtgttctt[T/C]tgaacgtcacttaaggcatacatg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18486 (Lymphoblastoid Cell Lines) MM1.S (plasma cell myeloma) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN IKZF2_HUMAN STAG1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.20 | 1.71 | 1.40 | n/a | No Hit | |||
| IKZF2_HUMAN | -1.54 | 2.56 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.10 | 1.53 | 1.13 | n/a | n/a | |||
| IKZF1_HUMAN | -1.25 | 1.69 | 1.50 | n/a | n/a | |||
| ATF7_HUMAN | -0.50 | 2.97 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, diabetic retinopathy in type 2 diabetes mellitus