rs6958366 chr7:77990269 T>A
- Sequence
gggatgaggttcctgggtcaatag[T/A]gttgtgtacctaggaggattatgg
- ASB in cell types
- K562 (myelogenous leukemia) ZR-75-1 (invasive ductal carcinoma) CFPAC-1(pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- FOXA1_HUMAN LMBL2_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.43 | 0.30 | 1.63 | -0.15 | Weak Concordant | |||
| LMBL2_HUMAN | 2.49 | -2.15 | 1.00 | n/a | n/a | |||
| FOXA2_HUMAN | 1.21 | 0.66 | 1.19 | -2.85 | Concordant |
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Motif analysis
