rs695872 chr12:111599125 G>A
- Sequence
gacgccggaacgcggcggggacgc[G/A]cgggcgccgagcggggaggcgcgg
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- BHE40_HUMAN TYY1_HUMAN BRD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | -2.63 | 1.90 | 1.33 | 2.44 | Concordant | |||
| TYY1_HUMAN | -0.57 | 1.83 | 2.00 | n/a | No Hit | |||
| BRD2_HUMAN | 1.01 | 0.67 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood