rs6961149 chr7:156438200 T>A
- Sequence
atgatttttttttatcatacagca[T/A]atttgcccaggtcataagcaaaca
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.10 | 0.16 | 1.81 | -3.75 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Hypothalamus, Esophagus_Muscularis, Nerve_Tibial, Prostate, Skin_Sun_Exposed_Lower_leg, Thyroid