rs6961561 chr7:3871025 G>A

Sequence
catcttcacaacattgatctacca[G/A]tccacgaacatgctgtacctctct
ASB in cell types
22RV1 (prostate carcinoma) VCaP (prostate carcinoma) breast tumor xenograft
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.17 -1.00 3.0·10-51.00 1.75 n/a No Hit
ANDR_HUMAN 2.96 -0.65 1.0·10-41.00 1.90 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP neuroblastoma (brain cancer),  stabilized warfarin dose,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Lung,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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