rs6962194 chr7:77122341 C>A
- Sequence
gaaagctctgaactctgacctgga[C/A]cccttgcctaagtccacccccttt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) WA09 (embryonic stem cells) liver
- ASB for transcription factors
- ESR1_HUMAN NRF1_HUMAN COT1_HUMAN ZN143_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.60 | 0.02 | 1.71 | n/a | No Hit | |||
| NRF1_HUMAN | 0.99 | 0.04 | 1.33 | n/a | No Hit | |||
| COT1_HUMAN | 1.46 | -1.46 | 1.00 | 0.76 | Weak Discordant | |||
| ZN143_HUMAN | 1.61 | -1.05 | 1.50 | n/a | No Hit | |||
| MNT_HUMAN | 1.59 | -0.38 | 1.38 | n/a | No Hit |
Items per page:
1 – 5 of 19
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood