rs6964992 chr7:159013263 C>T

Sequence
tcagattgggattgaggtcgaggt[C/T]ggggtcggggtcagggttggggtc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
COT1_HUMAN KDM1A_HUMAN TIF1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
COT1_HUMAN 2.02 -0.24 6.6·10-80.87 1.50 0.52 Weak Discordant
KDM1A_HUMAN 2.38 -0.43 5.9·10-41.00 1.33 n/a n/a
TIF1A_HUMAN 2.64 -4.48 1.5·10-31.00 1.50 n/a n/a
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Motif analysis

COT1_HUMAN Weak Discordant
COT1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Colon_Sigmoid,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Testis,  Thyroid

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