rs6967385 chr7:12351693 G>T

Sequence
gaaccacagtttgtgtagtaaatt[G/T]atttacaaactgtgtttcaactgt
ASB in cell types
ZR-75-1 (invasive ductal carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.14 1.10 1.002.3·10-3 1.59 4.32 Concordant
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

EMBL-EBI response to taxane treatment (placlitaxel)
GRASP ldl cholesterol,  ldl cholesterol change with statins,  paclitaxel-induced cytotoxicity in lymphoblastoid cell lines,  total cholesterol,  total cholesterol change with statins,  triglycerides
GTEx eQTL Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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