rs6968087 chr7:191904 G>A

Sequence
ggccccaagcaggaaggcgccccc[G/A]gcacaccagcccctctcagcgccc
ASB in cell types
HEK293 (embryonic kidney) 22RV1 (prostate carcinoma)
ASB for transcription factors
ZF69B_HUMAN ANDR_HUMAN PATZ1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZF69B_HUMAN n/a 2.60 1.001.3·10-4 2.00 n/a No Hit
ANDR_HUMAN 2.57 -1.50 1.8·10-31.00 2.00 n/a No Hit
PATZ1_HUMAN -2.83 1.95 1.002.5·10-3 1.50 -1.13 Weak Discordant
CTCF_HUMAN -1.00 1.56 1.005.5·10-3 1.75 n/a No Hit
ZSA5A_HUMAN -2.57 2.79 1.000.03 1.00 n/a No Hit
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Motif analysis

PATZ1_HUMAN Weak Discordant
PATZ1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Prostate,  Testis,  Thyroid,  Whole_Blood

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