rs696839 chr19:40875543 G>C
- Sequence
caccttatcaaggtgaactgagcc[G/C]cttctgtttcttctcttccctcta
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- KDM1A_HUMAN SPI1_HUMAN ZEB2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | 2.53 | -1.10 | 2.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.88 | -0.50 | 1.00 | -1.13 | Weak Concordant | |||
| ZEB2_HUMAN | 2.74 | -5.07 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Hippocampus, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis