rs6968631 chr7:27663057 A>G
- Sequence
ggtccgcagctgtgcgaaggacca[A/G]taagaggcctttttgaacagtgac
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) breast tumor CD14+ monocytes
- ASB for transcription factors
- ANDR_HUMAN ESR1_HUMAN STAT1_HUMAN HCFC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.85 | 0.10 | 1.90 | n/a | No Hit | |||
| ESR1_HUMAN | 2.62 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.92 | n/a | 3.00 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.66 | -1.87 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 0.36 | 1.34 | 1.18 | n/a | n/a |
Items per page:
1 – 5 of 6
Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid