rs6969207 chr7:27663137 G>A

Sequence
tgcctcatttacagcctgcgggcg[G/A]gagtctccttgtttaccaaagcag
ASB in cell types
K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) breast tumor U87 (glioblastoma)
ASB for transcription factors
ESR1_HUMAN ANDR_HUMAN CTBP1_HUMAN KMT2A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.04 n/a 4.1·10-31.00 2.00 n/a No Hit
ANDR_HUMAN 2.99 0.52 7.0·10-30.96 1.83 n/a No Hit
CTBP1_HUMAN n/a 2.43 1.008.7·10-3 2.00 n/a n/a
KMT2A_HUMAN 2.28 0.25 0.041.00 1.25 n/a No Hit
HDAC1_HUMAN -1.42 1.73 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin,  hdl cholesterol,  homa-ir,  total cholesterol
GTEx eQTL Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Testis,  Thyroid

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