rs6969879 chr7:64562993 T>C
- Sequence
tcccaatacctgcagataacggag[T/C]cacagaggctgggcctctaggagc
- ASB in cell types
- K562 (myelogenous leukemia) HCC1806(Squamous cell breast carcinoma, acantholytic variant) primary B-CLL cells SET2 (Adult acute megakaryoblastic leukemia, Homo Sapiens)
- ASB for transcription factors
- MNT_HUMAN TAF9B_HUMAN NFIC_HUMAN MGAP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 0.12 | 2.08 | 1.00 | n/a | No Hit | |||
| TAF9B_HUMAN | -2.08 | 2.41 | 1.00 | n/a | n/a | |||
| NFIC_HUMAN | -1.74 | 2.00 | 1.00 | n/a | No Hit | |||
| MGAP_HUMAN | -2.76 | 2.85 | 1.00 | n/a | No Hit | |||
| BRD2_HUMAN | -0.14 | 2.41 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, ldl cholesterol, ldl cholesterol change with statins, microalbuminuria, total cholesterol, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Uterus, Whole_Blood