rs6972914 chr7:55887588 T>G
- Sequence
gcggggccctcggcaccttctccc[T/G]cccgggtccaccgcggcggcggcg
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- TYY1_HUMAN ZBT8A_HUMAN ZBT20_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.44 | 0.07 | 2.25 | n/a | No Hit | |||
| ZBT8A_HUMAN | n/a | 1.49 | 1.50 | n/a | n/a | |||
| ZBT20_HUMAN | n/a | 2.59 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood