rs6973331 chr7:6613109 T>G

Sequence
cagatggggatatggcaaaggaag[T/G]ttggctgtcaagggcaggagagag
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
CREB1_HUMAN ATF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CREB1_HUMAN 1.13 n/a 2.7·10-41.00 1.33 n/a No Hit
ATF2_HUMAN 1.42 -0.72 0.041.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP obesity with early age of onset (age >2),  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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