rs6977848 chr7:25949900 T>G
- Sequence
ctggcgtctggagcactggcggca[T/G]cggcgaccacagcctctagagaca
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN GMEB1_HUMAN LMBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.34 | 1.12 | 1.34 | n/a | No Hit | |||
| STAG1_HUMAN | -0.14 | 1.16 | 1.04 | n/a | n/a | |||
| GMEB1_HUMAN | n/a | 3.37 | 2.00 | n/a | No Hit | |||
| LMBL2_HUMAN | n/a | 2.09 | 2.00 | n/a | n/a |
Items per page:
1 – 4 of 4