rs6977892 chr7:6516589 C>T
- Sequence
gaccgggaaagggagtctcccttt[C/T]ctggtggagttaaagaagactctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) neutrophils from periferal blood L1236 (Hodgkin lymphoma) transverse colon
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.86 | 0.64 | 1.34 | 1.11 | Weak Discordant |
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Motif analysis
