rs6978215 chr7:4974057 A>G
- Sequence
gacgccggggcagggccggaagga[A/G]tgcagcggctgccacggagctcgt
- ASB in cell types
- T47D (invasive ductal carcinoma) GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN TEAD3_HUMAN RAD21_HUMAN KDM5B_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.23 | 0.32 | 1.28 | n/a | No Hit | |||
| TEAD3_HUMAN | 2.12 | -1.85 | 1.00 | -5.62 | Concordant | |||
| RAD21_HUMAN | 1.37 | 0.82 | 1.07 | n/a | n/a | |||
| KDM5B_HUMAN | 2.77 | -4.84 | 1.50 | n/a | n/a | |||
| BRD4_HUMAN | 0.47 | 1.83 | 1.72 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Vagina, Whole_Blood