rs6978366 chr7:106434022 A>C
- Sequence
agtgttctaagattgagcaaataa[A/C]taaaatagtatgaataacaaaagc
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.85 | -0.70 | 1.50 | -1.34 | Weak Concordant | |||
| ANDR_HUMAN | 1.54 | -0.05 | 1.49 | -1.64 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP chronic kidney disease, mitral annular calcium, suicide attempts in bipolar disorder (substance free)