rs6978489 chr7:80924364 C>A
- Sequence
cacctcttggcaaacacatctaat[C/A]aaaagctcagtaaataagaaacgg
- ASB in cell types
- VCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN HXB13_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | n/a | 4.43 | 2.00 | 0.95 | Weak Concordant | |||
| FOXA1_HUMAN | -0.39 | 1.74 | 1.67 | n/a | No Hit | |||
| HXB13_HUMAN | -1.20 | 2.32 | 1.75 | 4.61 | Concordant | |||
| ESR1_HUMAN | n/a | 2.62 | 2.00 | n/a | No Hit |
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Motif analysis
