rs6978786 chr7:75741050 T>C
- Sequence
ggagactctagcgtagatgagaga[T/C]gatgagggcctagaagagaaggga
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) SEM (childhood B acute lymphoblastic leukemia) CD14+ monocytes
- ASB for transcription factors
- STAT1_HUMAN RUNX2_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 2.46 | 3.00 | n/a | No Hit | |||
| RUNX2_HUMAN | -1.86 | 2.40 | 1.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.18 | -0.10 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), cystatin c in serum, fasting blood glucose, schizophrenia, total cholesterol, triglycerides, variant creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Colon_Transverse, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood