rs6978804 chr7:2863064 T>C

Sequence
agtgtttgcatttttttccctccc[T/C]gtaaccgctagaccaccacggaac
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN ELF1_HUMAN IKZF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN 2.35 -1.46 1.3·10-31.00 1.00 n/a n/a
ELF1_HUMAN 2.67 -2.54 6.7·10-31.00 1.00 n/a No Hit
IKZF1_HUMAN 1.93 -0.37 0.051.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Testis Whole_Blood

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