rs6978926 chr7:23681004 G>C

Sequence
gggaggccggagcgagcgacaggg[G/C]ctcctctgcggcatcgtgggtggc
ASB in cell types
BIN-67 (Ovarian small cell carcinoma, hypercalcemic type) HEK293 (embryonic kidney)
ASB for transcription factors
ZN770_HUMAN A0A126GW21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN770_HUMAN -2.48 2.81 1.001.4·10-5 1.00 4.30 Concordant
A0A126GW21_HUMAN -3.24 3.29 1.002.1·10-5 1.00 n/a n/a
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Motif analysis

ZN770_HUMAN Concordant
ZN770_HUMAN pic

Genetic associations

GRASP obesity with early age of onset (age >2),  total cholesterol
GTEx eQTL Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Esophagus_Mucosa,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Testis,  Thyroid

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