rs6979364 chr7:51606676 A>G
- Sequence
tgtgcctgcctgtgggtgggggtg[A/G]cgtggcagtagctgattgccctcg
- ASB in cell types
- HEK293 (embryonic kidney) ESO-26 (Gastroesophageal junction adenocarcinoma) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- SP2_HUMAN KLF5_HUMAN HIC1_HUMAN GLIS2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | 2.79 | -2.52 | 1.00 | 2.51 | Discordant | |||
| KLF5_HUMAN | 2.76 | -2.50 | 1.00 | 1.41 | Weak Discordant | |||
| HIC1_HUMAN | 2.39 | -2.11 | 1.00 | n/a | No Hit | |||
| GLIS2_HUMAN | 2.02 | -3.42 | 1.50 | 0.08 | Weak Discordant |
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Motif analysis
