rs6979841 chr7:111187774 G>T
- Sequence
agtgcacacaggttatttacagag[G/T]aaactgaagcacagagaccttgaa
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma) breast tumor xenograft
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN A2NVP9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.93 | 2.86 | 2.31 | n/a | No Hit | |||
| FOXA1_HUMAN | -1.59 | 2.79 | 1.46 | 4.47 | Concordant | |||
| A2NVP9_HUMAN | n/a | 3.27 | 1.50 | n/a | n/a |
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Motif analysis
