rs6980803 chr8:11416892 C>G

Sequence
aacggagtttacaccctttccaaa[C/G]ataagagagacgagatctctggga
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN COT1_HUMAN BHE40_HUMAN IKZF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN 2.45 n/a 6.4·10-61.00 1.75 n/a n/a
COT1_HUMAN 2.90 n/a 1.0·10-51.00 1.50 n/a No Hit
BHE40_HUMAN 3.20 n/a 4.8·10-41.00 1.33 n/a No Hit
IKZF2_HUMAN 2.25 -2.14 5.0·10-41.00 1.50 n/a n/a
ATF7_HUMAN 2.90 -2.88 2.0·10-31.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol change with statins,  systolic blood pressure (sbp),  years of education
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Hippocampus,  Brain_Hypothalamus,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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