rs6980902 chr8:102197513 A>G

Sequence
cgaacaccaagctccactggaaac[A/G]gaatcttccgtcttgaaaatctgc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) erythroid cells A549 (lung carcinoma)
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View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
GM12878 (female B-cells lymphoblastoid cell line) -4.69 2.37 1.001.4·10-3 1.50
erythroid cells n/a 3.06 1.002.1·10-3 2.00
A549 (lung carcinoma) 0.33 0.95 0.822.7·10-3 2.00
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol change with statins,  mitral annular calcium,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Colon_Transverse,  Spleen,  Testis,  Thyroid,  Whole_Blood

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