rs6980978 chr8:11417045 C>T
- Sequence
tgaagaagccacaccacatctgaa[C/T]tgtcgctccccctctccccatact
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN IKZF1_HUMAN ENL_HUMAN NFAC3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 3.30 | n/a | 1.50 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.19 | -2.85 | 1.75 | n/a | n/a | |||
| ENL_HUMAN | 3.18 | n/a | 2.00 | n/a | n/a | |||
| NFAC3_HUMAN | 2.67 | -2.41 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.86 | n/a | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), college completion, diastolic blood pressure (dbp), eye color, hepatitis c virus (hcv)-induced liver fibrosis, salmonella-induced pyroptosis, systolic blood pressure (sbp), triglycerides, years of education
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood