rs6982888 chr8:42152948 A>G
- Sequence
agaggggaggagcggctcccagat[A/G]cccaatcagcggccttcaggcgca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) HepG2 (hepatoblastoma) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXK2_HUMAN RBM25_HUMAN STAG1_HUMAN ZFHX2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 4.20 | 0.88 | 1.50 | n/a | No Hit | |||
| RBM25_HUMAN | n/a | 0.40 | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.56 | 1.34 | 1.03 | n/a | n/a | |||
| ZFHX2_HUMAN | -2.36 | 1.56 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood