rs6987277 chr8:9082321 C>G

Sequence
atggtgttttatcacttccttcct[C/G]tggctcacgtccagtagacatgct
ASB in cell types
HEK293 (embryonic kidney) HUVEC-C (HUVEC, umbilical vein endothelial cells) MDM(monocyte derived macrophages) 22RV1 (prostate carcinoma)
ASB for transcription factors
TF65_HUMAN ANDR_HUMAN SPI1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 2.62 -4.81 4.9·10-91.00 2.00 n/a No Hit
ANDR_HUMAN 2.16 -1.43 2.9·10-31.00 2.00 n/a No Hit
SPI1_HUMAN 0.95 0.82 9.1·10-31.00 1.43 -1.22 Weak Concordant
STAT1_HUMAN 1.75 -0.71 0.011.00 2.00 n/a No Hit
PRDM6_HUMAN 2.95 n/a 0.011.00 2.00 n/a No Hit
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Motif analysis

SPI1_HUMAN Weak Concordant
SPI1_HUMAN pic

Genetic associations

GRASP birth weight,  diastolic blood pressure (dbp),  fasting blood glucose,  height,  ldl cholesterol change with statins,  parkinsons disease,  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Adipose_Visceral_Omentum,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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