rs698775 chr2:44361802 G>A
- Sequence
ctcactcaagatggctaccagcaa[G/A]aatggtgcaatggcgtgacagctc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- ZNF24_HUMAN FOXK2_HUMAN NCOA1_HUMAN HDAC2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZNF24_HUMAN | 0.32 | 1.78 | 1.67 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.00 | 1.79 | 1.88 | n/a | No Hit | |||
| NCOA1_HUMAN | -0.51 | 2.50 | 2.00 | n/a | n/a | |||
| HDAC2_HUMAN | -0.27 | 2.35 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), diabetic retinopathy in type 2 diabetes mellitus, hdl cholesterol, height
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Pituitary, Whole_Blood