rs6988218 chr8:27311613 A>T
- Sequence
ctgcaaatgggaaaaggagcctct[A/T]ccttaaccaatccccgggaacctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma) K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- NRF1_HUMAN FOXK2_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.53 | -4.66 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 0.33 | 2.21 | 1.50 | n/a | No Hit | |||
| RBM25_HUMAN | 0.23 | 2.14 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Testis, Thyroid, Whole_Blood