rs6990544 chr8:103125090 C>T

Sequence
ctaccttcccggcactagggggtg[C/T]tgtcttgtttagctattttcttag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) pancreas LNCaP (prostate carcinoma) adrenal gland
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN ZBTB2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.58 -0.06 1.9·10-2451.00 1.79 -2.91 Concordant
STAG1_HUMAN 2.56 -2.08 8.6·10-191.00 4.21 n/a n/a
RAD21_HUMAN 2.67 -2.23 3.3·10-111.00 1.27 n/a n/a
ZBTB2_HUMAN 3.64 n/a 1.5·10-41.00 1.33 n/a No Hit
ZN654_HUMAN 3.26 -4.73 2.0·10-41.00 1.33 n/a n/a
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Substantia_nigra,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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